External publications

Collaborators or external teams using the Cytomine software or algorithm variants

Have also a look at our list of methodological publications.

Johannes Kläger, Maximilian C. Koeller, André Oszwald, Gabriel Wasinger, David D’Andrea, Eva Compérat (2024). A single-center retrospective comparison of pT1 substaging methods in bladder cancer. Methods.

Lionel Gillot, Alizée Lebeau, Louis Baudin, Charles Pottier, Thomas Louis, Tania Durré, Rémi Longuespée, Gabriel Mazzucchelli, Christophe Nizet, Silvia Blacher, Frederic Kridelka, Agnes Noel (2022). Periostin in lymph node pre-metastatic niches governs lymphatic endothelial cell functions and metastatic colonization. Cellular and Molecular Life Sciences.

Lars Egevad, Brett Delahunt, Hemamali Samaratunga, Toyonori Tsuzuki, Henrik Olsson, Peter Ström, Cecilia Lindskog, Tomi Häkkinen, Kimmo Kartasalo, Martin Eklund, Pekka Ruusuvuori (2021). Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies. Virchows Archiv.

Edith Charlier, Céline Deroyer, Sophie Neuville, Zelda Plener, Olivier Malaise, Federica Ciregia, Philippe Gillet, Gilles Reuter, Mallory Salvé, Nadia Withofs, Roland Hustinx, Dominique de Seny, Michel G. Malaise (2020). Toward diagnostic relevance of the $\alpha$V$\beta$5, $\alpha$V$\beta$3, and $\alpha$V$\beta$6 integrins in OA: expression within human cartilage and spinal osteophytes. Bone Research.

Robin Heckenauer, Jonathan Weber, Cedric Wemmert, Friedrich Feuerhake, Michel Hassenforder, Pierre-Alain Muller, Germain Forestier (2020). Real-Time Detection of Glomeruli in Renal Pathology. 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Natacha Rocks, Céline Vanwinge, Coraline Radermecker, Silvia Blacher, Christine Gilles, Raphaël Marée, Alison Gillard, Brigitte Evrard, Christel Pequeux, Thomas Marichal, Agnes Noel, Didier Cataldo (2019). Ozone-primed neutrophils promote early steps of tumour cell metastasis to lungs by enhancing their NET production. Thorax.

Anne Grote, Nadine S. Schaadt, Germain Forestier, Cedric Wemmert, Friedrich Feuerhake (2019). Crowdsourcing of Histological Image Labeling and Object Delineation by Medical Students. IEEE Transactions on Medical Imaging.

Thomas Lampert, Odyssee Merveille, Jessica Schmitz, Germain Forestier, Friedrich Feuerhake, Cedric Wemmert (2019). Strategies for Training Stain Invariant CNNS. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

Céline Deroyer, Edith Charlier, Sophie Neuville, Olivier Malaise, Philippe Gillet, William Kurth, Alain Chariot, Michel Malaise, Dominique de Seny (2019). CEMIP (KIAA1199) induces a fibrosis-like process in osteoarthritic chondrocytes. Cell Death & Disease.

Daniel Felipe Gonzalez Obando, Diana Mandache, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid (2019). Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images. Digital Pathology.

Charles Pottier, Mark Kriegsmann, Deborah Alberts, Nicolas Smargiasso, Dominique Baiwir, Gabriel Mazzucchelli, Michael Herfs, Margaux Fresnais, Rita Casadonte, Philippe Delvenne, Edwin Pauw, Rémi Longuespée (2018). Microproteomic Profiling of High-Grade Squamous Intraepithelial Lesion of the Cervix: Insight into Biological Mechanisms of Dysplasia and New Potential Diagnostic Markers. PROTEOMICS – Clinical Applications.

Mohammad F. Jamaluddin, Mohammad F. A. Fauzi, Fazly S. Abas, Jenny T. H. Lee, See Y. Khor, Kean H. Teoh, Lai M. Looi (2018). Cell Classification in ER-Stained Whole Slide Breast Cancer Images Using Convolutional Neural Network. 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Sylvie Multon, Laurence Pesesse, Alodie Weatherspoon, Sandra Florquin, Jean-François Van de Poel, Pierre Martin, Grégoire Vincke, Renaud Hoyoux, Raphaël Marée, Dominique Verpoorten, Pierre Bonnet, Pascale Quatresooz, Valérie Defaweux (2018). Un «~Massive Open Online Course~» (MOOC) sur des travaux pratiques en histologie~: un objectif, un outil, un public varié~! Retour sur une première expérience. Annales de Pathologie.

Diana Mandache, Eugenie Dalimier, John Durkin, Claude Boccara, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid (2018). Basal cell carcinoma detection in full field OCT images using convolutional neural networks. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Sandrine Bekaert, Marianne Fillet, Benoit Detry, Muriel Pichavant, Raphaël Marée, Agnes Noel, Natacha Rocks, Didier Cataldo (2017). Inflammation-Generated Extracellular Matrix Fragments Drive Lung Metastasis. Cancer Growth and Metastasis.

Rémi Longuespée, Deborah Alberts, Charles Pottier, Nicolas Smargiasso, Gabriel Mazzucchelli, Dominique Baiwir, Mark Kriegsmann, Michael Herfs, Jörg Kriegsmann, Philippe Delvenne, Edwin De Pauw (2016). A laser microdissection-based workflow for FFPE tissue microproteomics: Important considerations for small sample processing. Methods.

Meriem Boukerroucha, Claire Josse, Sonia ElGuendi, Bouchra Boujemla, Pierre Frères, Raphaël Marée, Stephane Wenric, Karin Segers, Joelle Collignon, Guy Jerusalem, Vincent Bours (2015). Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers. BMC Cancer.

Natacha Leroi, Nor Eddine Sounni, Eva Van Overmeire, Silvia Blacher, Raphaël Marée, Jo Van Ginderachter, François Lallemand, Eric Lenaerts, Philippe Coucke, Agnes Noel, Philippe Martinive (2015). The timing of surgery after neoadjuvant radiotherapy influences tumor dissemination in a preclinical model. Oncotarget.

Jessica Aceto, Rasoul Nourizadeh-Lillabadi, Raphaël Marée, Nadia Dardenne, Nathalie Jeanray, Louis Wehenkel, Peter Aleström, Jack J. W. A. van Loon, Marc Muller (2015). Zebrafish Bone and General Physiology Are Differently Affected by Hormones or Changes in Gravity. PLOS ONE.

Meggy Suarez-Carmona, Morgane Bourcy, Julien Lesage, Natacha Leroi, Laïdya Syne, Silvia Blacher, Pascale Hubert, Charlotte Erpicum, Jean-Michel Foidart, Philippe Delvenne, Philippe Birembaut, Agnes Noel, Myriam Polette, Christine Gilles (2015). Soluble factors regulated by epithelial-mesenchymal transition mediate tumour angiogenesis and myeloid cell recruitment. The Journal of Pathology.

Nathalie Jeanray, Raphaël Marée, Benoist Pruvot, Olivier Stern, Pierre Geurts, Louis Wehenkel, Marc Muller (2015). Phenotype Classification of Zebrafish Embryos by Supervised Learning. PLOS ONE.

Laurent Weekers, Pascal De Tullio, Christophe Bovy, Laurence Poma, Raphaël Marée, Catherine Bonvoisin, Jean-Olivier Defraigne, Jean-Marie Krzesinsk, François Jouret (2015). Activation of the calcium-sensing receptor before renal ischemia/reperfusion exacerbates kidney injury. American journal of translational research.

Virginie Bertrand, Dimitriya Bozukova, Tiziana Svaldo Lanero, Yi-Shiang Huang, Daureen Schol, Nancy Rosière, Magda Grauwels, Anne-Sophie Duwez, Christine Jérôme, Christophe Pagnoulle, Edwin De Pauw, Marie-Claire De Pauw-Gillet (2014). Biointerface multiparametric study of intraocular lens acrylic materials. Journal of Cataract & Refractive Surgery.

Agnes Delga, Frederic Goffin, Frederic Kridelka, Raphaël Marée, Chantal Lambert, Philippe Delvenne (2014). Evaluation of CellSolutions BestPrep® Automated Thin-Layer Liquid-Based Cytology Papanicolaou Slide Preparation and BestCyte® Cell Sorter Imaging System. Acta Cytologica.